Supporting Information Medel et al. 10.1073/pnas.1100129108 SI Materials and Methods Theoretical Method. First-principles electronic structure investigations were carried out using a molecular orbital approach within a gradient corrected density functional framework. The molecular orbitals are expressed as linear combinations of atomic orbitals formed via a combination of Gaussian functions centered at the atomic sites. The exchange-correlation contributions are included within a gradient corrected (GGA) density functional as proposed by Perdew et al. (1). The actual calculations were carried out using the deMon2k software (2). For all the atoms we employed the gradient corrected optimized double zeta valence polarized basis set (3) and the GEN-A2 auxiliary function set. The exchange-correlation potential was calculated via a numerical integration on an adaptive grid from the orbital density (4). To determine the geometry and spin multiplicity of the ground state, the configuration space was sampled by starting from several initial configurations and spin multiplicities and optimizing the geometry employing the quasi-Newton Levenberg– Marquardt method (5). All structures were fully optimized in delocalized redundant coordinates without imposing any symmetry constraints, to allow for full variational freedom. The molecular

geometries and orbitals were plotted using the Molekel software (6). To eliminate any uncertainty due to the choice of the basis set and the numerical procedure one additional complimentary scheme was used. All electron calculations were carried out, using the Naval Research Laboratory Molecular Orbital Library (NRLMOL) developed by Pederson and coworkers (7–9). Here the Hamiltonian matrix elements are evaluated by numerical integration over a mesh of points. The basis sets, built from a variable number of primitive Gaussians, are based on a total-energy minimization for free atoms and are optimized for all electron density functional calculations (9). The basis sets were supplemented with a diffuse d Gaussian to allow further variational freedom. For details of the codes and the basis sets, the reader is referred to earlier papers (7–9). In general we found a very good agreement between the deMon2k and NRLMOL calculations. The results presented in the paper are based on the deMon2k calculations, with the exception of the ðFeMg8 Þ2 dimer for which the ferromagnetic and antiferromagnetic states were calculated with the NRLMOL code.

1. Perdew JP, Burke K, Enzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865–3868. 2. Koster AM, et al., (2006) deMon2k, V. 2.3.6 (The deMon Developers Community, Cinvestav, Mexico), available at www.deMon-software.com. 3. Calaminici P, Janetzko F, Köster AM, Mejia-Olvera R, Zuniga-Gutierrez B (2007) Density functional theory optimized basis sets for gradient corrected functionals: 3d transition metal systems. J Chem Phys 126:044108. 4. Köster AM, Flores-Moreno R, Reveles JU (2004) Efficient and reliable numerical integration of exchange-correlation energies and potentials. J Chem Phys 121:681–690.

5. Reveles JU, Köster AM (2005) Geometry optimization in density functional methods. J Comput Chem 25:1109–1116. 6. Flükiger P, Lüthi HP, Portmann S, Weber J. (2000) Molekel 4.0 (Swiss National Supercomputing Centre CSCS, Manno, Switzerland). 7. Pederson MR, Jackson KA (1990) Variational mesh for quantum-mechanical simulations. Phys Rev B Condens Matter 41:7453–7461. 8. Jackson K, Pederson MR (1990) Accurate forces in a local-orbital approach to the local-density approximation. Phys Rev B Condens Matter 42:3276–3281. 9. Porezag D, Pederson MR (1999) Optimization of Gaussian basis sets for densityfunctional calculations. Phys Rev A 60:2840–2847.

Medel et al. www.pnas.org/cgi/doi/10.1073/pnas.1100129108

1 of 4

Fig. S1. The one electron energy levels and orbital wavefunction isosurfaces (isoval ¼ 0.01 a:u:) in the TMMg8 clusters. (A) TM ¼ Sc, (B) TM ¼ Ti, (C) TM ¼ V, and (D) TM ¼ Cr. The majority and minority levels are shown. Continuous lines correspond to the filled levels, whereas the dotted lines correspond to the unfilled states. For each level, the angular momentum and their occupancy has been marked. The 2D occupied energy levels are highlighted in a dotted red box.

Medel et al. www.pnas.org/cgi/doi/10.1073/pnas.1100129108

2 of 4

Fig. S2. The one electron energy levels and orbital charge wavefunction isosurfaces (isoval ¼ 0.01 a:u:) in the TMMg8 clusters. (E) TM ¼ Mn, (F) TM ¼ Fe, (G) TM ¼ Co, and (H) TM ¼ Ni. See caption of Fig. S1.

Fig. S3. The lowest energy structure and next spin isomer of the ðFeMg8 Þ2 dimer. (A) The antiferromagnetic (0 μB ) and (B) the ferromagnetic state (4 μB ) state. Arrows indicate the direction of Fe local spin moments.

Medel et al. www.pnas.org/cgi/doi/10.1073/pnas.1100129108

3 of 4

Fig. S4. The density of states for the lowest energy structure and next spin isomer of the ðFeMg8 Þ2 dimer. (A) The antiferromagnetic (0 μB ) and (B) the ferromagnetic (4 μB ) state. The Fermi level is marked with a dotted line.

Medel et al. www.pnas.org/cgi/doi/10.1073/pnas.1100129108

4 of 4

Supporting Information

May 31, 2011 - The molecular orbitals are expressed as linear combinations of atomic orbitals ... minimization for free atoms and are optimized for all electron.

1006KB Sizes 1 Downloads 303 Views

Recommend Documents

Supporting Information
Jul 13, 2010 - macaque brain consists of 95 vertices and 2,402 edges [1], where the network models brain regions as vertices and the presence of long dis-.

Supporting Information
Oct 26, 2010 - between 0.3 and 1.0 mL of an aqueous colloidal dispersion. (4 g∕L) of partially doped polyaniline nanofibers was mixed with. 3 mL of DI water.

Supporting Information
May 31, 2011 - tions were carried out using a molecular orbital approach within a gradient corrected density functional framework. The molecular orbitals are ...

Supporting Information
Oct 26, 2010 - +1.2 V and then back to −0.2 V by using a scan rate of 50 mV∕s. ... The effect of polymer nanofiber concentration on film .... gold electrodes on SiO2∕Si and (Top Right) a close-up illustration of the electrode geometry.

Supporting Information
Jul 13, 2010 - brain regions, lack of acronym field in the connectivity database, the ..... 2. while (some vertex in (Vk+1, Ek+1) has degree less than k + 1). (a) Set mk .... Goodale MA, Mansfield RJ (MIT Press, Cambridge, MA), pp 549-586. 18.

Download Supporting Information
Mar 4, 2011 - metal-semiconductor-metal devices in both sandwich-type planar and fiber geometries were compared. The materials used in each form factor ...

Download Supporting Information
Mar 4, 2011 - S3–S5 very clearly show a strong correlation between location of Zn and Se (and sulfur). Recall that prior to drawing, the constructed preform ...

Supporting Information
To analyze the electron mobility in monolayer MoS2, we use a semiclassical model based on the relaxation time .... the phonon dispersion for the LO phonons to be flat so that Fr. LO ω ω. = . Therefore, the ..... undercut geometry. The devices were

Supporting Information
Abs peak. (nm). Emi peak. (nm). Extinction coefficient (M-1cm-1) Quantum yield. Cy2. 489 ..... Laysan Bio Inc.) passivated quartz slide (Finkenbeiner) surface at ...

Supporting Information
quartet as a function of inter-dye distances computed based on R0 values. .... filters (F1, NF03-532E-25, Semrock; F2, NF03-633E-25, Semrock), and a long-pass ..... Each addition was incubated for 5 minutes, and followed by washing with TN.

Supporting Information
BSA-functionalized slides. To a single succinimide-functionalized slide was ad- ded a 500 µL solution of 20 mg/mL BSA in 5% Na2CO3. The solution was ...

Download Supporting Information
Dec 14, 2011 - −50 °C for 3 d until the samples became completely dry. The ... To determine the effect of neutrophils on the scaffold .... Fig. S4. Illustration of angiogenic response at the interface between treatment and wounded skin.

Amemiya supporting information
Generalized Theory for Nanoscale Voltammetric Measurements of Heterogeneous Electron-Transfer Kinetics at Macroscopic. Substrates by Scanning ...

Download Supporting Information (PDF) - PNAS
AND-gate switch for cell polarization and migration. PLoS One 3:e3068. 5. Ismail JA, et al. (2003) Immunohistologic labeling of murine endothelium. Cardiovasc.

Download Supporting Information (PDF) - PNAS
Deposition on Nonactivated Hydrophobic Surfaces. A plastic polyvi- ... nanofiber films are less prone to delamination from the surface of. ITO after prolonged and ...

ReCiPe supporting information
Jan 6, 2009 - A. ADDITIONAL INFORMATION ON CLIMATE CHANGE STEP 1: MIDPOINT ...... degree and manner to which individuals respond.

Supporting Information-Final
*[email protected]. Supporting Information ... 0.25 mm E. Merck silica gel plates (60F-254) using UV light as the visualizing agent and 10% ethanolic ...

Supporting Information Relation between stability and resilience ...
Jul 23, 2015 - For this experiment, the optical density was measured at 600nm using a Thermo Scientific Varioskan Flash. Multimode Reader. Data analysis.

Supporting Information Controlled photonic ...
plasma reactive ion etching (ICP RIE) system, Oxford 100. Then, the lift-off ... Considering each metal binding domain is ~2-3 nm in diameter, the .... Calculation of the thermophoretic free energy of a 22-nm polymer particle. The transport of ...

Supporting Information Relation between stability and resilience ...
Jul 23, 2015 - Data analysis. Statistical indicators. 2 ... For the experiments with fixed environmental conditions, statistical indicators were calculated after the ...

Supporting Information Text S1 Human mobility networks ... - PLOS
We list the measures from those with the highest impact on the air travel flows, aiming at ... 8Center for Complex Networks and Systems Research (CNetS), School of ... 9Pervasive Technology Institute, Indiana University, Bloomington, IN, USA ..... In