July 10, 2012

July 11, 2012

Location: Ottawa Convention Center, Room #208 Location: Ottawa Convention Center, Room #214 Time Session Event Time Session Event Welcome & 8:45 AM 8:45 AM Logistics Logistics Mike Sanderson - "Compressing the 9:00 AM Keynote 9:00 AM Keynote Dan Whaley - Reimagining peer-review. tree of life onto a single DVD" 10:00 AM Break 10:00 AM Break 10:30 AM Full talks K. Cranston - Making the Tree of Life Phylotastic! 10:30 AM Full talks T. Vision - Data reuse and scholarly reward: understanding practice and bu R. Ree - Ivy: interactive, visual M. Langille - Leveraging ancestral state reconstruction to infer community f programming for phylogenetics J. Sachs - Normalizing Biodiversity Ontologies for the A. Antonelli - Using Biological Databases to Infer Large-Scale Patterns of Migration, Diversification, and Niche Evolution Semantic Web A.-S. Fiston-Lavier - Screening for adaptation evidences: Annotation of transposable elements population nextJ. Deck - The Triplifier Simplifier --- Making it easy to become part of the semantic web for biological datainproducers generation sequencing data using T-lex A. Sethuraman - MULTICLUST – Multinomial Clustering of Multi-locus Genotypes to Identify Genetic Subpopulation Structure Panel discussion Panel Discussion 12.00pm

1.30pm

2.10pm

2:45–3: 15pm

Lunch Break

12.15pm

Challenge 1.45pm Presentations K. Cranston: Overview and : Synthesizing introduction of entrants Trees C. Whidden: Observations from a 244taxa Bacterial Supertree constructed to minimize lateral genetic transfer

Lunch Break Lightning talks

S. Hleap and Blouin - Robust Inference Of Structural Modules In Sets Of Homologous Proteins D. Wong and Beiko - Finding Lateral Gene Transfer in Microbial Communities Using Metagenomic Data P. De Wit et al - The Simple Fool’s Guide to Population Genomics via RNA-Seq: An introduction to highthroughput sequencing data analysis C. Boettiger - The rOpenSci Project

B. O'Meara et al: DateLife P. Chakrabarty - Genetypes: a concept to help integrate molecular systematics and traditional taxonomy K. Hertweck - An ontology for transposable elements and other repetitive A. Steele sequences et al - Ofin Vertnet, the ageDarwin of genomics Core, And Big Data R. Beiko - Monitoring biodiversity using next-generation D. Mozzherin et al - Global Names Initiative: Automatic Discovery, Reconciliation, and Interconnection of Scientific Names from Literature, Re sequencing techniques W. Jetz - Map Of Life - Integrating P. Midford - Arachnolingua: Words about what spiders do Global Spatial Biodiversity Knowledge A. Steele et al - Map Of Life, Under H. Lapp et al - Liberating Our Beautiful Trees: A Call to Arms The Hood D. Parks et al - GenGIS 2: Geospatial analysis of genetic and genomic datasets, with new gradient algorithms and an extensible framework Birds-of-a2.30pm Feather Break Break (and setup for software bazaar) 3.00pm (floating) D. Parks et al - Gengis: A Geospatial Information System For Genomic Data Lightning talks

Sign-up document with scant notes for a few groups: http: //bit.ly/iEvoBio12BoF

B. O'Meara - Lampyr: Biodiversity Teaching App B. O'Meara et al: DateLife

Data Curation - http://bit.ly/S6FpVG

3.15pm

Software Bazaar & Geneious Challenge (in Room #215!)

M. Anisimova - CodonPhyML: Software for Fast Maximum Likelihood Phylogeny Estimation under Codon Models M. Layeghifard et al - EcoNet Application

DataLife mini-hack - see http://datelife.org/submit.php Linking initiatives such as Open Tree of Life, Map of Life, Date Life, and NeoPhylota - A. Antonelli lead 3.30pm

Birds-of-aFeather

A. Steele - Map of Life demonstration

Liberating beautiful trees - http://bit.ly/LV2BI2 (H. Lapp, lead)

C. Widden: Observations from a 244taxa Bacterial Supertree constructed to minimize lateral genetic transfer Geneious Challenge Competition entrants: Charles Ma - PlasmoDB and PiroplasmoDB plugins Mattia Prosperi - QuRe 5.30pm

Adjourn for Day 1

Issues related to phyloreferencing (defining names or attaching annotations to trees using phylogenetic definitions) - M. Holder (lead)

4.15pm

BoF report out

July 10, 2012 Location: Ottawa Convention Center, Room #208 Time Session Event

July 11, 2012 Location: Ottawa Convention Center, Room #214 Time Session Event Winner is Chris Widden's entry titled "Observations from a 244-taxa Bacterial Supertree constructed to minimize Challenge 4.40pm lateral genetic transfer". Award 4.45pm 5.00pm

Wrap-Up End of iEvoBio 2012

July 10, 2012 July 11, 2012

generation sequencing data using T-lex ... throughput sequencing data analysis. 2.10pm. Lightning ... A. Steele et al - Of Vertnet, Darwin Core, And Big Data.

NAN Sizes 1 Downloads 223 Views

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