Package ‘hcmr’ March 23, 2016 Type Package Title Highway Capacity Manual Calculation Version 1.0.0 Date 2015-09-16 Author Kyle Ward Maintainer Kyle Ward Description Uses link-level attributes to calculate HCM capacities (hourly service volumes). License MIT + file LICENSE Imports dplyr (>= 0.4.3) LazyData true Suggests knitr, rmarkdown, ggplot2, tidyr (>= 0.3.1), readr (>= 0.1.1) VignetteBuilder knitr RoxygenNote 5.0.1 NeedsCompilation no

R topics documented: arterialPBFFS . . . . . arterial_speedConstant bptsfCoeffTbl . . . . . freewayLC . . . . . . freewayMSF . . . . . . hcmr . . . . . . . . . . hcm_arterial . . . . . . hcm_calculate . . . . . hcm_collector . . . . . hcm_freeway . . . . . hcm_ftCheck . . . . . hcm_local . . . . . . . hcm_mlHighway . . . hcm_tlHighway . . . . hwylinks . . . . . . . . mlHighwayAPD . . . mlHighwayMSF . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . . 1

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

. . . . . . . . . . . . . . . . .

2 3 3 4 4 5 5 6 7 8 9 10 11 12 12 13 14

2

arterialPBFFS tlHighwayATS . . tlHighwayEtATS . tlHighwayEtPTSF . tlHighwayFgATS . tlHighwayFgPTSF tlHighwayFnpATS tlHighwayFnpPTSF tlHighwayPTSF . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

. . . . . . . .

Index

arterialPBFFS

14 15 15 16 16 17 17 18 19

Arterial Percent of Base Free-flow Speed

Description This function takes volume, capacity, and other parameters and returns the LOS based on PBFFS. Usage arterialPBFFS(vol, L, c, Sfo, Sf, LOS, at, lanes, med, terrain, C, gC, P, tr, delay) Arguments vol

Volume (veh/hr)

L

Segment length (ft)

c

Ultimate capacity

Sfo

Base free-flow speed (mph)

Sf

Free-flow speed (mph)

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

med

Median treatment; one of c("Restrictive","Non-Restrictive", "None"). Restrictive median treatments do not allow left turns except at designated locations, Non-Restrictive treatments have a center two-way-left-turn lane, and None implies that there is no median treatment at all (a double yellow line). Default is Restrictive.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

C

Cycle Length (sec)

gC

Effective green time to cycle length ratio

P

Proportion arriving during green

tr

Running time

delay

T/F whether to return the control delay

arterial_speedConstant

3

arterial_speedConstant Arterial - Speed Constant Lookup

Description A lookup table that provides speed constants based on posted speed limits. Usage arterial_speedConstant Format A data frame with 7 observations SpeedLimit Posted speed limit on the link SpeedConstant Speed constant to use Source Exhibit 17-11 HCM 2010

bptsfCoeffTbl

Two-Lane Highway - Base Percent Time Spent Following

Description A lookup table the provides alpha and beta values based on the demand flow rate. Usage bptsfCoeffTbl Format A data frame with 8 observations DemandFlowRate Demand Flow Rate a alpha to use b beta to use Source Exhibit 15-20 HCM 2010

4

freewayMSF

freewayLC

Freeway - Lateral Clearance Adjustment

Description A lookup table that provides the lateral clearance adjustment to FFS based on lanes and clearnace. Usage freewayLC Format A data frame with 28 observations RightLateralClearance Right-side lateral clearance DirectionalLanes Lanes in one direction flc Adjustment factor Source Exhibit 11-9 HCM 2010

freewayMSF

Freeway - Maximum Service Flow Rate

Description A lookup table that provides maximum service flow rates for LOS D and E based on free-flow speed. Usage freewayMSF Format A data frame with 5 observations FFS Free-flow Speed LOSD Maximum service flow rate while maintaining LOS D LOSE Maximum service flow rate while maintaining LOS E Source Exhibit 11-17 HCM 2010

hcmr

5

hcmr: A package to compute link capacities and freeflow speeds

hcmr

Description The primary function for users is hcm_calculate

hcm_arterial

HCM Arterial Function

Description This function takes link-level attributes and default values to calculate hourly flow rates for arterial segments. For arterials, the returned free-flow speed is actually the "running speed", which includes signal delay. Usage hcm_arterial(speed = FALSE, LOS = "E", type = "m", at = 2, lanes = 1, sl = 45, med = "None", terrain = "rolling") Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

type

Whether the road is a principal or minor arterial.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

sl

Posted speed limit in miles per hour.

med

Median treatment; one of c("Restrictive","Non-Restrictive", "None"). Restrictive median treatments do not allow left turns except at designated locations, Non-Restrictive treatments have a center two-way-left-turn lane, and None implies that there is no median treatment at all (a double yellow line). Default is Restrictive.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

Details This section documents some of the assumptions used by the function. Factors determined by the at. • Intersection spacing (mi): Urban: 0.3; Suburban: 0.6; Rural: 1.5 • Proportion with curb: Urban: 1; Suburban: 0.7; Rural: 0

6

hcm_calculate • Access point density (per mile) Urban: 25; Suburban: 16; Rural: 8 Assumed platoon ratios • Urban Principal: 0.60 • Urban Minor: 0.50 • Other Principal: 0.60 • Other Minor: 0.50 Assumed proportion of green time • Urban Principal: 0.70 • Urban Minor: 0.60 • Other Principal: 0.70 • Other Minor: 0.60 Assumed cycle length (sec) • Urban Principal: 120 • Urban Minor: 90 • Other Principal: 150 • Other Minor: 120 Factors determined by the med. • Proportion with median: Restrictive: 0.8; NonRestrictive: 0.37; None: 0

Examples ## Not run: hcm_arterial(LOS = "E") ## End(Not run)

hcm_calculate

Highway Capacity Calculation Function

Description Calculates the Highway Capacity Manual (2010) free flow speed or capacity based on link attributes. Usage hcm_calculate(ft = "Freeway", at = "Suburban", sl = 65, med = "Restrictive", lanes = 2, terrain = "rolling", LOS = "E", speed = FALSE)

hcm_collector

7

Arguments ft

Facility type field. Must be one of c("Freeway", "MLHighway","TLHighway", "PrArterial", "M See Details. Default is Freeway.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

sl

Posted speed limit in miles per hour.

med

Median treatment; one of c("Restrictive","Non-Restrictive", "None"). Restrictive median treatments do not allow left turns except at designated locations, Non-Restrictive treatments have a center two-way-left-turn lane, and None implies that there is no median treatment at all (a double yellow line). Default is Restrictive.

lanes

Number of through lanes for single direction.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

Details This function is a vectorized wrapper to hcm_ftCheck, which determines which HCM methodology to apply based on the labeled ft field. Though this function uses several default values if they are not supplied, these defaults may be overridden in the individual facility type calculators. Value If speed == FALSE(default), the HCM 2010 link capacity in vehicles per hour. Otherwise, the HCM 2010 link free flow speed in miles per hour.

hcm_collector

Collector Function (not HCM based)

Description This function takes basic link-level attributes and returns speed or hourly flow rate (veh/hr). Usage hcm_collector(speed = FALSE, LOS = "E", at = 2, lanes = 1, sl = 35) Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

sl

Posted speed limit in miles per hour.

8

hcm_freeway

Details This section documents some of the assumptions used by the function. Factors determined by the at. • Posted to free-flow speed adjustment: Urban: sl - 0.50 * sl + 8.5 Suburban: sl - .25 * sl + 3.25 Rural: sl • LOS D capacities per lane Urban: 650 Suburban: 750 Rural: 750 LOS E capacities are the LOS D + 100 Examples hcm_collector(LOS = "E")

hcm_freeway

HCM Freeway Function

Description This function takes link-level attributes and default values to calculate hourly flow rates for freeway segments. Usage hcm_freeway(speed = FALSE, LOS = "E", at = 2, lanes = 2, terrain = "rolling") Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

Details This section documents some of the assumptions used by the function. Factors determined by the at. • Lane width: Urban: 12’; Suburban: 12’; Rural: 11’ • Right-side lateral clearance: Urban: 4’; Suburban: 5’; Rural: 6’

hcm_ftCheck

9

• Ramp density (ramps per mile): Urban: 0.5; Suburban: 0.5; Rural: 0.25 • Proportion of Heavy Vehicles: Urban: 0.14; Suburban: 0.17; Rural: 0.20 Factors determined by the terrain. • Passenger-Car Equivalent of Heavy Vehicles: level: 1.5; rolling: 2.5; mountain: 4.5 • Passenger-Car Equivalent of Recreational Vehicles: level: 1.2; rolling: 2.0; mountain: 4.0 Source HCM Chapter 11 Examples ## Not run: hcm_freeway(LOS = "E") ## End(Not run)

hcm_ftCheck

HCM Facility Type Check

Description This function uses the facility type to select the appropriate function to perform the speed and capacity calculations. Usage hcm_ftCheck(ft = ft, at = at, sl = sl, med = med, lanes = lanes, terrain = terrain, LOS = LOS, speed = speed) Arguments ft

Facility type field. Must be one of c("Freeway", "MLHighway","TLHighway", "PrArterial", "M See Details. Default is Freeway.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

sl

Posted speed limit in miles per hour.

med

Median treatment; one of c("Restrictive","Non-Restrictive", "None"). Restrictive median treatments do not allow left turns except at designated locations, Non-Restrictive treatments have a center two-way-left-turn lane, and None implies that there is no median treatment at all (a double yellow line). Default is Restrictive.

lanes

Number of through lanes for single direction.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

10

hcm_local LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

Local Function (not HCM based)

hcm_local

Description This function takes basic link-level attributes and returns speed or hourly flow rate (veh/hr). Usage hcm_local(speed = FALSE, LOS = "E", at = 2, lanes = 1, sl = 25) Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

sl

Posted speed limit in miles per hour.

Details Factors determined by the at. • Posted to free-flow speed adjustment: Urban: sl - 0.50 * sl + 7.5 Suburban: sl - .25 * sl + 2.25 Rural: sl - 1 • LOS D capacities per lane Urban: 600 Suburban: 700 Rural: 700 LOS E capacities are the LOS D + 100 Examples hcm_local(LOS = "E")

hcm_mlHighway

hcm_mlHighway

11

HCM Multi-Lane Highway Function

Description This function takes link-level attributes and default values to calculate hourly flow rates for multilane highway segments. Usage hcm_mlHighway(speed = FALSE, LOS = "E", at = 3, lanes = 2, sl = 55, med = "Restrictive", terrain = "rolling") Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

at

Area type field; one of c("Urban", "Suburban", "Rural"). Default is Suburban

lanes

Number of through lanes for single direction.

sl

Posted speed limit in miles per hour.

med

Median treatment; one of c("Restrictive","Non-Restrictive", "None"). Restrictive median treatments do not allow left turns except at designated locations, Non-Restrictive treatments have a center two-way-left-turn lane, and None implies that there is no median treatment at all (a double yellow line). Default is Restrictive.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

Details This section documents some of the assumptions used by the function. Min/Max speed limit is 45/60 mph, and the minimum number of lanes is 2. Factors determined by the at. • Lane width: Urban: 12’; Suburban: 12’; Rural: 11’ • Lateral clearance: Urban: 12’; Suburban: 10’; Rural: 8’ • Access point density: Urban: 30; Suburban: 20; Rural: 5 • Proportion of Heavy Vehicles: Urban: 0.05; Suburban: 0.08; Rural: 0.1 Factors determined by the terrain. • Passenger-Car Equivalent of Heavy Vehicles: level: 1.5; rolling: 2.5; mountain: 4.5 • Passenger-Car Equivalent of Recreational Vehicles: level: 1.2; rolling: 2.0; mountain: 4.0

12

hwylinks

Examples hcm_mlHighway(LOS = "E")

hcm_tlHighway

HCM Two-Lane Highway Function

Description This function takes link-level attributes and default values to calculate hourly flow rates for two-lane highway segments. Usage hcm_tlHighway(speed = FALSE, LOS = "E", sl = 55, terrain = "rolling") Arguments speed

Estimated free flow speed (TRUE), or estimated capacity (FALSE, default).

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

sl

Posted speed limit in miles per hour.

terrain

Terrain type, either "level","rolling" (default), or "mountain".

Details This section documents some of the assumptions used by the function. Factors determined by the terrain. • Percent no-passing zone: level: 20; rolling: 40; mountain: 60

hwylinks

Sample Table of Highway Links

Description Created using the sampleTableCreation.r script. Enumerates all combinations of highway attributes, including some that should return warnings and null values when evaluated. Usage hwylinks

mlHighwayAPD

13

Format A data frame with 4,536 observations ft Facility type at Area type sl Speed limit med Median type lanes Number of lanes (in one direction) terrain Terrain type

Source sampleTableCreation.r

mlHighwayAPD

Multi-Lane Highway - Access Point Density Adjustment

Description A lookup table that provides the adjustment based on access point density.

Usage mlHighwayAPD

Format A data frame with 41 observations APD Access point density Factor Adjustment factor

Source Exhibit 14-11 HCM 2010

14

tlHighwayATS

Multi-Lane Highway - Maximum Service Flow Rate

mlHighwayMSF

Description A lookup table that provides maximum service flow rates for LOS D and E based on free-flow speed. Usage mlHighwayMSF Format A data frame with 4 observations FFS Free-flow Speed LOSD Maximum service flow rate while maintaining LOS D LOSE Maximum service flow rate while maintaining LOS E Source Exhibit 14-17 HCM 2010

tlHighwayATS

HCM Two-Lane ATS Capacity

Description This function is used to iteratively find the volume level that translates into the specified level of service Usage tlHighwayATS(vol, FFS, phf, pnpz, Pt, Pr, terrain, LOS, pfm = 60) Arguments vol FFS phf pnpz terrain LOS

pfm fhv fg

Volume Free-flow speed Peak hour factor Percent no-passing zone Terrain type, either "level","rolling" (default), or "mountain". Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D. Percent of flow in major direction Heavy vehicles factor grade factor

tlHighwayEtATS

tlHighwayEtATS

15

Two-Lane Highway - Truck PCEs (ATS)

Description A lookup table that provides the passenger car equivalent of trucks based on demand flow rate in the analysis direction (veh/hr) and terrain when using the average-travel-speed (ATS) approach. Usage tlHighwayEtATS Format A data frame with 9 observations DemandFlowRate Volume (veh/hr) EtLevel PCE for level terrain EtRolling PCE for rolling terrain Source Exhibit 15-11 HCM 2010

tlHighwayEtPTSF

Two-Lane Highway - Truck PCEs (PTSF)

Description A lookup table that provides the passenger car equivalent of trucks based on demand flow rate in the analysis direction (veh/hr) and terrain when using the percent-time-spent-following (PTSF) approach. Usage tlHighwayEtPTSF Format A data frame with 9 observations DemandFlowRate Demand flow rate in the analysis direction EtLevel PCE of trucks on level terrain EtRolling PCE of trucks on rolling terrain Source Exhibit 15-18 HCM 2010

16

tlHighwayFgPTSF

tlHighwayFgATS

Two-Lane Highway - Grade adjustment (ATS)

Description A lookup table that provides the adjustment based on the grade and volume when using the averagetravel-speed (ATS) approach. Usage tlHighwayFgATS Format A data frame with 9 observations DemandFlowRate Demand flow rate in the analysis direction fg Grade adjustment (does not apply to level terrain) Source Exhibit 15-9 HCM 2010

tlHighwayFgPTSF

Two-Lane Highway - Grade adjustment (PTSF)

Description A lookup table that provides the adjustment based on the grade and volume when using the percenttime-spent-following (PTSF) approach. Usage tlHighwayFgPTSF Format A data frame with 9 observations DemandFlowRate Demand flow rate in the analysis direction fg Grade adjustment (does not apply to level terrain) Source Exhibit 15-16 HCM 2010

tlHighwayFnpATS

tlHighwayFnpATS

17

Two-Lane Highway - Percent no passing adjustment (ATS)

Description A lookup table that provides the adjustment based on the percent of no passing zones, opposing volume, and free-flow speed when using the average-travel-speed (ATS) approach. Usage tlHighwayFnpATS Format A data frame with 18 observations OpposingVol Volume in the opposite direction. FFS Free-flow speed. PctNoPass Percent no passing zone. fnp No-passing factor. Source Exhibit 15-15 HCM 2010

tlHighwayFnpPTSF

Two-Lane Highway - Percent no passing adjustment (PTSF)

Description A lookup table that provides the adjustment based on the percent of no passing zone and the volume when using the percent-time-spent- following (PTSF) approach. Usage tlHighwayFnpPTSF Format A data frame with 24 observations Volume Link volume. PctMajorFlow Percent major flow direction. PctNoPass Percent of no passing zone. fnp Adjustment factor. Source Exhibit 15-21 HCM 2010

18

tlHighwayPTSF

tlHighwayPTSF

HCM Two-Lane PTSF Capacity

Description This function is used to iteratively find the volume level that translates into the specified level of service Usage tlHighwayPTSF(vol, LOS, phf, Pt, Pr, pnpz, terrain, pfm = 60) Arguments vol

Volume

LOS

Specifies the Level of Service to return(NA) ("D" or "E"). Typically volume-todelay functions in assignment algorithms use LOS E, though certain planning applications prefer to look at LOS D.

phf

Peak hour factor

Pt

percent trucks

Pr

percent recreational vehicles

pnpz

Percent no-passing zone

terrain

Terrain type, either "level","rolling" (default), or "mountain".

pfm

Percent of flow in major direction

Index ∗Topic datasets arterial_speedConstant, 3 bptsfCoeffTbl, 3 freewayLC, 4 freewayMSF, 4 hwylinks, 12 mlHighwayAPD, 13 mlHighwayMSF, 14 tlHighwayEtATS, 15 tlHighwayEtPTSF, 15 tlHighwayFgATS, 16 tlHighwayFgPTSF, 16 tlHighwayFnpATS, 17 tlHighwayFnpPTSF, 17 arterial_speedConstant, 3 arterialPBFFS, 2 bptsfCoeffTbl, 3 freewayLC, 4 freewayMSF, 4 hcm_arterial, 5 hcm_calculate, 5, 6 hcm_collector, 7 hcm_freeway, 8 hcm_ftCheck, 7, 9 hcm_local, 10 hcm_mlHighway, 11 hcm_tlHighway, 12 hcmr, 5 hcmr-package (hcmr), 5 hwylinks, 12 mlHighwayAPD, 13 mlHighwayMSF, 14 tlHighwayATS, 14 tlHighwayEtATS, 15 tlHighwayEtPTSF, 15 tlHighwayFgATS, 16 tlHighwayFgPTSF, 16 tlHighwayFnpATS, 17 tlHighwayFnpPTSF, 17 tlHighwayPTSF, 18 19

Package 'hcmr' - GitHub

Effective green time to cycle length ratio. P ... Two-Lane Highway - Base Percent Time Spent Following .... Passenger-Car Equivalent of Recreational Vehicles:.

112KB Sizes 2 Downloads 367 Views

Recommend Documents

Package 'CaseCrossover' - GitHub
Apr 21, 2017 - strategies for picking the exposure will be tested in the analysis, a named list of .... A data frame of subjects as generated by the function ...

Package 'SelfControlledCaseSeries' - GitHub
Mar 27, 2017 - 365, minAge = 18 * 365, maxAge = 65 * 365, minBaselineRate = 0.001,. maxBaselineRate = 0.01 .... Modeling and Computer Simulation 23, 10 .... function ggsave in the ggplot2 package for supported file formats. Details.

package management.key - GitHub
Which version of Faker did our app depend on? If we run our app in a year and on a different machine, will it work? If we are developing several apps and they each require different versions of Faker, will our apps work? Page 6. Gem Management with B

Package 'MethodEvaluation' - GitHub
Feb 17, 2017 - effects in real data based on negative control drug-outcome pairs. Further included are .... one wants to nest the analysis within the indication.

Package 'CohortMethod' - GitHub
Jun 23, 2017 - in an observational database in the OMOP Common Data Model. It extracts the ..... Create a CohortMethod analysis specification. Description.

Package 'deGPS' - GitHub
Sep 9, 2014 - The package also contains function to generate GP distrbuted data to be an ... apply deGPS on fly data with the empirical T stats downloaded at.

Package 'fishhook' - GitHub
April 18, 2017. Title R Package for performing Gamma-Poisson regression on somatic mutation count data. Version 0.1. Description Package for performing Gamma-Poisson regression on somatic mutation count data with covariates to identify mutational enr

Package 'TransPhylo' - GitHub
Jan 16, 2017 - Shape parameter of the Gamma probability density function ... makeTTree(off.r, off.p, pi, w.shape, w.scale, ws.shape, ws.scale, maxTime,.

Package 'fishhook' - GitHub
Apr 18, 2017 - count data with covariates to identify mutational enrichment or depletion in a .... $signature interval covariates: fraction of bases overlapping feature .... toggles between creating a pdf (FALSE) or an interactive html widget ...

Package 'cmgo' - GitHub
Aug 21, 2017 - blue all Voronoi segments, b) in red all segments fully within the channel polygon, c) in green all ..... if [TRUE] the plot will be saved as pdf.

Package 'EmpiricalCalibration' - GitHub
study setup. This empirical null distribution can be used to compute a .... Description. Odds ratios from a case-control design. Usage data(caseControl). Format.

Package 'OhdsiRTools' - GitHub
April 7, 2017. Type Package. Title Tools for Maintaining OHDSI R Packages. Version 1.3.0. Date 2017-4-06. Author Martijn J. Schuemie [aut, cre],. Marc A.

Package 'FeatureExtraction' - GitHub
deleteCovariatesSmallCount = 100, longTermDays = 365, ..... Description. Uses a bag-of-words approach to construct covariates based on free-text. Usage.

Package 'EvidenceSynthesis' - GitHub
Mar 19, 2018 - This includes functions for performing meta-analysis and forest plots. Imports ggplot2 (>= 2.0.0),. gridExtra, meta,. EmpiricalCalibration. License Apache License 2.0. URL https://github.com/OHDSI/EvidenceSynthesis. BugReports https://

Package 'IcTemporalPatternDiscovery' - GitHub
Nov 25, 2015 - exposureOutcomePairs = data.frame(outcomeId = c(196794, ... strategies for picking the exposure will be tested in the analysis, a named list of.

Package 'SelfControlledCohort' - GitHub
If multiple strategies for picking the exposure will be tested in the analysis, a named list of ... studyStartDate Date for minimum allowable data for index exposure.

Package 'DatabaseConnector' - GitHub
Aug 14, 2017 - connect creates a connection to a database server .There are four ways to call this function: • connect(dbms, user, domain, password, server, ...

Package 'CaseControl' - GitHub
control analyses in an observational database in the OMOP Common Data .... multiple strategies for picking the nesting cohort will be tested in the analysis, a.

Single studies using the CaseControl package - GitHub
Jun 29, 2016 - Loading data on the cases and potential controls from the database .... for which no matching control was found be removed from the analysis.

Single studies using the SelfControlledCaseSeries package - GitHub
Transforming the data into a format suitable for an SCCS study. .... Now we can tell SelfControlledCaseSeries to extract all necessary data for our analysis:.

Single studies using the CaseCrossover package - GitHub
Apr 21, 2017 - Loading data on the cases (and potential controls when performing a case-time-control analysis) from the database needed for matching. 2.

Single studies using the CohortMethod package - GitHub
Jun 19, 2017 - We need to tell R how to connect to the server where the data are. ..... work has been dedicated to provide the CohortMethod package.

Tutorial introducing the R package TransPhylo - GitHub
Jan 16, 2017 - disease transmission using genomic data. The input is a dated phylogeny, ... In the second part we will analyse the dataset simulated in the first ...