FAIR Metric FM-I3 Mark D. Wilkinson, Susanna-Assunta Sansone, Erik Schultes, Peter Doorn, Luiz Olavo Bonino da Silva Santos, Michel Dumontier January 10, 2018
1
FIELD
DESCRIPTION
Metric Identi er
FM-I3:
Metric Name
Use Quali ed References
To which principle does it apply?
I3
-
https://purl.org/fair-metrics/FM_I3
(meta)data
include
quali ed
references
to
other
(meta)data What is being measured?
Relationships within (meta)data, and between local and third-party data, have explicit and `useful' semantic meaning
Why should we measure it?
One of the reasons that HTML is not suitable for machinereadable knowledge representation is that the hyperlinks between one document and another do not explain the nature of the relationship - it is unquali ed. For Interoperability, the relationships within and between data must be more semantically rich than is (somehow) related to. Numerous
ontologies
include
richer
relationships
that
can be used for this purpose, at various levels of domainspeci city. For example, the use of skos for terminologies (e.g. exact matches), or the use of SIO for genomics (e.g. has phenotype for the relationship between a variant and its phenotypic consequences). Similarly,
dbxrefs
must
be
predicated
with
a
mean-
ingful relationship what is the nature of the cross-reference? Finally, data silos thwart interoperability. Thus, we should reasonably expect that some of the references/relations point outwards to other resources, owned by third-parties; this is one of the requirements for 5 star linked data.
What must be provided?
Linksets (in the formal sense) representing part or all of your resource
How do we measure it?
The linksets must have quali ed references At least one of the links must be in a dierent Web domain (or the equivalent of a dierent namespace for non-URI identi ers)
2
What is a valid result?
- References are quali ed - Qualities are beyond Xref or is related to - One of the cross-references points outwards to a distinct namespace
Jan 10, 2018 - ing. Why should we measure it? One of the reasons that HTML is not suitable for machine- readable knowledge representation is that the hyperlinks between one document and another do not explain the nature of the relationship - it is unqualified . For Interop- erability, the relationships within and between ...
Jan 10, 2018 - my Zenodo Deposit for polyA. (https://doi.org/10.5281/zenodo.47641). Test Query: 10.5281/zenodo.47641 orthology. GOOGLE: Pass (#1 hit); BING: Fail (no hits); Yahoo: Fail (no hits); Baidu: Pass (#1 hit). Test Query: protein domain ortho
Jan 10, 2018 - i) A URL to the description of the protocol ii) true/false as to whether the protocol is open source iii) true/false as to whether the protocol is (royalty) free. How do we measure it? Do an HTTP get on the URL to see if it returns a v
Jan 11, 2018 - sufficiently rich in this sense - that the metadata document and the metadata elements are machine readable. Other- wise, it will also be difficult to understand what the digital resource is and what information is being provided about
Jan 10, 2018 - data. What must be provided? URL to a formal metadata longevity plan. How do we measure it? Resolve the URL. What is a valid result? - Successful resolution. - Returns a document that represents a plan or policy of some kind. - Prefera
FAIR Metric FM-I2. Mark D. Wilkinson, Susanna-Assunta Sansone,. Erik Schultes, Peter Doorn,. Luiz Olavo Bonino da Silva Santos, Michel Dumontier. January 10, 2018. 1 ... themselves be FAIR, for example, terms from open, community-accepted vocabularie
Jan 10, 2018 - the vocabularies used to describe citational provenance (e.g. dublin core). The second points to one of the vocabularies. (likely domain-specific) that is used to describe contextual provenance (e.g. EDAM). How do we measure it? We res
Jan 10, 2018 - interpretation for that -> HTML fails; PDF fails shared. -> that there are many users of the language . acknowledged within your community. -> hard to prove. . could we use google to query for your filetype (can't discriminate between
Jan 10, 2018 - to unambiguously refer that resource, and that resource alone. Otherwise, an identifier shared by multiple re- sources will confound efforts to describe that resource, or to use the identifier to retrieve it. Examples of identi- fier s
Jan 10, 2018 - What must be provided? IRI of the license (e.g. its URL) for the data license and for the metadata license. How do we measure it? Resolve the IRI(s) using its associated resolution protocol. What is a valid result? A document containin
Jan 10, 2018 - Certification, from a recognized body, of the resource meet- ing community standards. Why should we ... dards will often render a dataset `reuseless' because criti- cal information about its context or provenance is ... A certification
Jan 10, 2018 - A metadata document should also not result in ambiguity about the digital object it is describing. This can be assured if the metadata document explicitly refers to the digital object by its IRI. What must be provided? The URL of the m
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