Base Quality Distribution

Mean Base Quality

30

25

20

15 0

25

50

75

Position in read RG

ERR050082

ERR068361

SRR400038

SRR400039

100

Base Content Distribution ERR050082

ERR068361

SRR400038

SRR400039

Base Content Fraction

0.3 0.2 0.1 0.0

0.3 0.2 0.1 0.0 0

25

50

75

100

0

25

Position in read Base

A

C

G

N

T

50

75

100

Read Length Distribution

Fraction of reads

1.00

0.75

0.50

0.25

0.00 0

25

50

75

Read length RG

ERR050082

ERR068361

SRR400038

SRR400039

100

Mapping Quality Distribution

Fraction of reads

0.75

0.50

0.25

0.00 0

20

40

60

Mapping Quality RG

ERR050082

ERR068361

SRR400038

SRR400039

Coverage Distribution NA06985 500,000,000

Count

400,000,000

300,000,000

200,000,000

100,000,000

0 0

1

3

5

7

8

10

12

Coverage RG

ERR050082

ERR068361

SRR400038

SRR400039

14

16

Insert Size Distribution Insert size > 831 (11.98%) Insert size < 156 (0.44%) ERR050082

ERR068361

SRR400038

SRR400039

3,000,000

Layout 2,000,000

Count

NA06985

1,000,000

F− F+ R− R+

InsertSize

0 80

0 60

0 40

0 20

0 80

0 60

0 40

0 20

0 80

0 60

0 40

0 20

0 80

0 60

0 40

20

0

0

Sample Library #QCFail QCFailFraction #DuplicateMarked DuplicateFraction #Unmapped UnmappedFraction #Mapped MappedFraction #MappedRead1 #MappedRead2 RatioMapped2vsMapped1 #SecondaryAlignments SecondaryAlignmentFraction #SupplementaryAlignments SupplementaryAlignmentFraction #Pairs #MappedPairs MappedFraction #MappedSameChr MappedSameChrFraction #ReferenceBp #ReferenceNs #AlignedBases #MatchedBases MatchRate #MismatchedBases MismatchRate #DeletionsCigarD DeletionRate #InsertionsCigarI InsertionRate #SoftClippedBases SoftClipRate #HardClippedBases HardClipRate ErrorRate MedianReadLength DefaultLibraryLayout MedianInsertSize MedianCoverage SDCoverage MedianMAPQ

NA06985 SRR400039 0 0 2431204 0.00977714 1093849 0.00439894 245137001 0.985824 122869879 122267122 0.995094 3578267 0.014597 8972999 0.036604 130576303 129641649 0.992842 106683474 0.81702 3216700169 173893355 24249557863 24027309538 0.990835 222248325 0.00916505 3209151 0.000132339 2125617 8.76559e−05 26154469 0.00107855 0 0 0.0104636 101 2 349 8 0.340204 60

NA06985 SRR400038 0 0 1370415 0.0114318 1081555 0.00902218 117425436 0.979546 59161519 58263917 0.984828 1562045 0.0133024 4186877 0.0356556 62797390 61706651 0.982631 51125989 0.814142 3216700169 173893355 11439865089 11241195882 0.982634 198669207 0.0173664 1412772 0.000123496 1029203 8.99664e−05 13978289 0.00122189 0 0 0.0188017 100 2 348 4 0.320429 60

NA06985 ERR068361 0 0 897657 0.0095942 1520782 0.0162542 91144057 0.974152 45676305 45467752 0.995434 674414 0.00739943 3598217 0.0394784 48914962 47976665 0.980818 46127107 0.943006 3216700169 173893355 8976300240 8918470223 0.993557 57830017 0.00644252 999924 0.000111396 792792 8.83206e−05 6152364 0.000685401 0 0 0.00732764 100 2 493 3 0.341641 60

NA06985 ERR050082 0 0 754067 0.00892491 1545333 0.0182901 82190748 0.972785 41174957 41015791 0.996134 810858 0.00986556 3238496 0.0394022 44267679 43358636 0.979465 41725963 0.942583 3216700169 173893355 8057270066 7996763684 0.99249 60506382 0.00750954 1027379 0.00012751 753384 9.35036e−05 8295662 0.00102959 0 0 0.00876014 100 2 497 2 0.33387 60

Base Quality Distribution - GitHub

3216700169. 173893355. 24249557863. 24027309538. 0.990835. 222248325. 0.00916505. 3209151. 0.000132339. 2125617. 8.76559e−05. 26154469.

67KB Sizes 4 Downloads 501 Views

Recommend Documents

Base Quality Distribution - GitHub
ERR992655. 0. 25. 50. 75. 100. 0.0. 0.1. 0.2. 0.3. Position in read. Base Content Fraction. Base. A. C. G. N. T. Base Content Distribution ...

Base Quality Distribution - GitHub
SRR702072. 0. 25. 50. 75. 100. 0.0. 0.1. 0.2. 0.3. Position in read. Base Content Fraction. Base. A. C. G. N. T. Base Content Distribution ...

Base Shield v2.sch - GitHub
Page 1. 2015/3/23 11:34:14 E:\Eagles\Base Shield v2\Base Shield v2.sch (Sheet: 1/1)

Quantitative Quality Control - GitHub
Australian National Reference Stations: Sensor Data. E. B. Morello ... analysis. High temporal resolution observations of core variables are taken across the ...

Display (Model B) - Base PCB - GitHub
Alarm Clock. TITLE. Display (Model B) - Base PCB. REV. PART #. CLK-PC-07. DOCUMENT #. UNITS. INCHES. SIZE. B. DATE 2/8/2015. CLK-DWG-10. BENOIT ...

Changes in the standard/axxia-dev/base Branch - GitHub
standard/axxia-dev/base-10.8.2.x branch is axxia_linux_10.8.2.7. • Configuration and device tree cleanup. 10.8.1.6 Changes. • Add support for X9 PCIe DW MSI.

Income Distribution, Quality Sorting and Trade
Nov 27, 2014 - Product quality has been highlighted as an important determinant of trade in recent empir- ical and theoretical .... the relative size of the group of consumers that value the particular quality level and can afford it. .... The model

Recommendations for in-situ data Near Real Time Quality ... - GitHub
data centre has some hope to be able to correct them in .... different from adjacent ones, is a spike in both size .... average values is more than 1°C then all.

Sentence-Level Quality Estimation for MT System ... - GitHub
combination. ▷ Two systems submitted. 1. Sentence-level system combination based on QE. 2. Confusion network based system combination. 3 / 20 ...

INSTANT Sunda Data Report Description and Quality Control - GitHub
Figure 7. Data coverage for Timor South Slope, deployment 1. ...... 6:08 Timor1_160_694734.txt. 25868. 14.00. -1.62 big temp drift. 694736-903. Timor 1. 140m.

On the Base Station Selection and Base Station ...
General Terms. Game Theory, Potential Games, Base Station Selection, Base. Station Sharing ... republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. ..... However, building the matrix ˆA requires

base recortables.pdf
Sign in. Loading… Whoops! There was a problem loading more pages. Retrying... Whoops! There was a problem previewing this document. Retrying.

Acid - Base Chemistry.pdf
acid-base. strength structure effects. on acidity. general,. Bronsted Lowry,. Lewis. Acid-Base. Page 4 of 28. Acid - Base Chemistry.pdf. Acid - Base Chemistry.pdf.

Base decisions on customer location
longitude, street address, business name, current traffic conditions, or live transit ... Call ​startActivityForResult()​, passing it the intent and a pre-defined request.

base ten mat.pdf
... loading more pages. Whoops! There was a problem previewing this document. Retrying... Download. Connect more apps... base ten mat.pdf. base ten mat.pdf.

Oil Base Muds
Additives of 59 pcf Oil. Base Mud. Value in. 100 bbl mud. Value in 150 bbl mud. Oil Base. Mud in Lab. 1. Gasoil (bbl). 73. 110. 0.4 liter. 2. Fluid Loss Control (sacks). 18-20. 27-30. 0.3 g. 3 Primary EmulsifierD.Vert. (drum) نﻮﯿﺴﻟﻮﻣا Ù

CORSO BASE FUMETTO.pdf
Inchiostrazione delle tavole finali e comportamento. Page 2 of 2. CORSO BASE FUMETTO.pdf. CORSO BASE FUMETTO.pdf. Open. Extract. Open with. Sign In.

Return 2 base
Flash gallery. factory deluxe. Return 2 base- Download.Return 2 base. ... Arussian journal pdf.Counter-Strike Source nosteam.Return 2 base.Port ofcall bergman ...

2017 BASE schedule.pdf
Fri 4/28 *A&M Consolidated Home V 7:00. May Playoffs. May Baseball Banquet. Page 1 of 1. 2017 BASE schedule.pdf. 2017 BASE schedule.pdf. Open. Extract.

Stilt Base Parking.pdf
There was a problem previewing this document. Retrying... Download. Connect more apps... Try one of the apps below to open or edit this item. Main menu.

2017 BASE roster.pdf
979-209-7937 Athletic Office: (979) 209-7927. [email protected] RHS Principal: Bennie Mayes. Assistant Coaches: Kent Dudley, Jared Henke, RHS ...

BASE CAJA OCTUBRE.pdf
Page 1 of 1. oct-17 oct-16 % $ 2017 2016 % $. INGRESOS TOTALES 168.754 128.073 31,8% 40.681 1.634.907 1.249.572 30,8% 385.335. Tributarios 155.756 120.341 29,4% 35.415 1.520.339 1.172.730 29,6% 347.609. Rentas de la propiedad 5.354 1.801 197,3% 3.553